Goldmine is an R package that integrates information to help biologists interpret the genomic ranges that result from epigenome-wide sequencing experiments. The package takes as input any set of genomic ranges (defined by chromosome, start, end) and will annotate these ranges with respect to known genes and features.
We have created a step-by-step how to for new users to learn the essential functions of the R package and perform an analysis on example data.
For more advanced options, please refer to the function manual. This information is also available from within R using the "?" command.
Please refer to our open access manuscript to learn more about Goldmine. Please cite this work if Goldmine is useful in your research.
Please open an issue on the Goldmine GitHub Issues page for questions, bug reports, or enhancement requests.
You may also contact the package author with questions or feedback: